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Trent Northen
… programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy … available to JGI users.  Dr. Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes cycle carbon and …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & … were: Simon Roux and Matthew Kellom for the JGI Metagenome Program Ellen Dow and Elisha Wood-Charlson for … Metabolomics Platform Blake Simmons for The BioManufactory Completed VFP applications are due on January 12, 2022. …
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Plant Pan-Genomics Comes of Age
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What Happens To a Rainforest When You Dial Up Drought?
… Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited speakers shared how … address of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, … the rhizosphere but also abundant everywhere in the earth’s soils. While she admits that it “0.25% doesn’t seem like a …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes are … more reusable, and more insightful, for the future of studying microbial communities.   …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. … sharing.  Recently, researchers have been able to study both sides of this interaction up close, using RNA … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks … grass that adroitly handles droughts, floods and poor soils. This is the first paper that describes sorghum’s … a limiting factor – before or after flowering. For the study, the team grew two sorghum varieties: one that …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … Impact This dataset gives researchers a new foundation for studying how fungi produce and manage energy at the cellular … First, they scanned over 26,000 publicly available metagenomes in the JGI's IMG portal for mitochondrial …
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Alabama A&M Interns Access An Abundance of Knowledge
… DOE RENEW initiative, undergraduate student Ti’Yanna Watson and graduate student LaMonika Dent worked with JGI … Alabama A&M University this fall for my master’s in plant soil science and my career focus is plant breeding. Ti’Yanna … of root exudates, which overall influences the health and composition of the root microbiome and rhizosphere. Ti’Yanna …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local … is a perennial grass that quickly grows in a variety of soils and water conditions, standing taller than basketball … biologist at HudsonAlpha and first author of the study. “For that, it’s necessary to have the plant’s genome …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …
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