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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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Daniel Udwary
Dr. Udwary serves as a computational biologist for JGI’s Secondary Metabolites group. His … research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. …
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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Dispatches From JGI Interns
… flagship JGI-UC Merced Internship Program invites undergraduate and graduate students to engage in real, impactful research projects … 2021 cohort describe their deep dives into genomics, computational tools, and big data.  …
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A Complex Confection Decoded: Sugarcane Reference Genome
… for the sugarcane cultivar R570 has been  published in  Nature by an international consortium. With the genetic code … for  biofuels and other bioproducts. Finally, understanding how brown rust disease resistance works in sugarcane could … cultivar R570 has been generated and  reported in the journal  Nature . The work led by researchers at Australia’s …
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific … mechanisms they had identified. For example, in comparing how liverwort and flowering plants had adapted to their …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. … are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Almost all known virophage genomes share only four genes in common: major and minor capsid proteins (MCP …
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Crysten Blaby-Haas
… joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership between JGI and the … NIH Postdoctoral Researcher, UCLA … Handling Editor, Journal Experimental Botany, 2022 – present  University of … Comm 15:3167. Hammack AT, Blaby-Haas CE. (2024) Machine learning sheds light on microbial dark proteins. Nature Rev …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … and identified from environmental samples (metagenomes). However, the quality and completeness of … The work was led by research scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group …
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JGI Early Career Researchers Featured in mSystems Special Issue
… are among the authors who offer perspectives on what the next five years of innovation could look like. In one … and experimental approaches with the aim of eventually studying virus-host dynamics in nature. In the last few … working to address some of the most pressing challenges of our time. For more information, please visit  …
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