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An Automated Tool for Assessing Virus Data Quality
… and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled … virus sequences vary widely. In a previous effort, an international consortium recommended specific … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less … most abundant plants in the ocean, originated in Japan before spreading around the globe. Now, scientists have shed … Nature Plants , was able to assess absolute time estimates for major colonization events. It was previously assumed, …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change impact on marine … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
For the first time, a team has comprehensively described … of microorganisms live among viruses that infect them. But what trends govern those virus-host interactions? Do … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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W. Berkeley Kauffman
Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of new applications … utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… to Susannah Tringe , one of eight scientists and engineers who received the 2020 Ernest Orlando Lawrence Award , one of … highest honors! Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial … Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s …
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Adam Reisselman on being a 2016 DOE Computational Science Graduate Fellow
Department of Energy's Computational Science Graduate Fellowship (DOE CSGF) program was developed to meet the Nation's growing need for science and technology professionals with advanced … Adam Riesselman of Harvard University worked with DOE JGI's Sam Deutsch. Learn more about the DOE Computational …
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Gotta Catch 'Em Gall
… (UC Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer plants. So they’ve looked into wasps that … how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these …
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