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Streamlining Regulon Identification in Bacteria
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … regulation is critical to ensuring genes vital for growth and survival across various environments are … While characterizing sigma factors is the most straightforward application of the technology, in principle, …
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JGI-UC Merced Interns Share Their 2021 Experiences
… from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone … in professional development enrichment activities. For some students in the 2021 cohort, this was their first … career enjoyed the chance to develop new skills needed for their PhD research. And for the first time in this …
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An Automated Tool for Assessing Virus Data Quality
… virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and best practices for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced …
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Eelgrass Proves to Be Much Younger Than We Thought
… most abundant plants in the ocean, originated in Japan before spreading around the globe. Now, scientists have shed … Nature Plants , was able to assess absolute time estimates for major colonization events. It was previously assumed, … just 0.2% of the ocean floor, these meadows are responsible for almost one-third of carbon sequestered in the ocean. In …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
For the first time, a team has comprehensively described … studying a microbial mat from Cone Pool in Mono County, California, scientists have used sequencing methods for the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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W. Berkeley Kauffman
Berkeley is responsible for receiving and processing user samples. His R&D work … utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… highest honors! Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial … Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s Microbial …
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata …
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Adam Reisselman on being a 2016 DOE Computational Science Graduate Fellow
… program was developed to meet the Nation's growing need for science and technology professionals with advanced … Adam Riesselman of Harvard University worked with DOE JGI's Sam Deutsch. Learn more about the DOE Computational …
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Gotta Catch 'Em Gall
… (UC Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer plants. So they’ve looked into … how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these …
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