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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… back story — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often loosely understood, leaving potential targets for crop engineering untouched. Research recently published … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Accelerating Metagenomics Discoveries with Deep Learning
… participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … to “learn” features. State of the art algorithms can perform astonishing degrees of feature recognition: for … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of …
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The Case for Conservation
… advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … could lead to the discovery of genes that could be used for multiple biotechnological applications. These … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … (the “chytrids”).  A collaborative team led by Joey Spatafora at Oregon State University, Jason Stajich at the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the …
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Green Algae Reveal One mRNA Encodes Many Proteins
… research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … enabled by the “Facilities Integrating Collaborations for User Science” (FICUS) collaborative science initiative …
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A One-Stop Shop for Analyzing Algal Genomes
… Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for bioenergy and the greater bioeconomy. By bringing … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Alabama A&M Interns Access An Abundance of Knowledge
… an internship program to bring students to the JGI for research training experience. Enabled by the DOE … and I’ll be attending Alabama A&M University this fall for my master’s in plant soil science and my career focus is …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 … genomic data usage is having the appropriate contextual information, or metadata, stored with them. GOLD provides …
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Promoting the Power of Viral Metagenomics
… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos … Since early 2020, people all over the world have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses that infect organisms much …
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Waiting to Respire
… 2019 in Nature Communications , two research teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria and … of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus …
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Boosting Small Molecule Production in Super “Soup”
… to make products such as proteins, and the mechanisms for maintenance to keep processes running smoothly. As … structure into a cell-free system. The work complements efforts to further develop sustainable alternative approaches … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Refining the Process of Identifying Algae Biotechnology Candidates
… -- copy to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems … water and carbon dioxide so they can grow, and then harvest for use as biofuels and other bioproducts. As any good cook … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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