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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … a highly recombining microbial population. This work showcases the utility of single cell sequencing, as monitoring …
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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their ever-changing environments better? We could unlock new innovations to drive more productive …
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Defining a Pan-Genome for Antarctic Archaea
… environments, and researchers are interested in learning how these microbes have learned to adapt from marine to … South Wales (UNSW)-Sydney professor Rick Cavicchioli compared two strains of haloarchaea from different Antarctic … cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing lab. So …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also produces an atmosphere-warming gas: methane. Those emissions mainly come from gut … breaking down plant matter. So since 2010, the JGI has supported researchers studying those microbial …
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Virus-Microbe Interactions of Mud Island Mangroves
… in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was … by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and David Paez-Espino. … the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his …
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iPHoP: A Matchmaker for Phages and their Hosts
… understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … what these viruses can do. Building on existing virus-host prediction approaches, researchers have created a new program …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad … our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and accessibility are critical requirements for amplifying the JGI’s impact. Data generated from a …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These … -- more reproducible, more reusable, and more insightful, for the future of studying microbial communities.   …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… Congratulations to Tanja Woyke, who has been awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium … Genomics Program since 2009 and heads the Single Cells group . Woyke also holds appointments as Adjunct Scientist at …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… some of their most important functions. Even in the chilly waters of Antarctica, tiny ocean-dwellers called … other oceans. That zinc turns out to be extremely important for polar phytoplankton.  After peering into the function … which explores genomics of algal diversity and biology to support basic science as well as bioenergy and …
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Silver age of GOLD introduces new features
… OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 … repository, making curated microbiome metadata that follows community standards freely available, and enabling … reliable manner. The JGI team managing GOLD already works closely with two other DOE-funded projects — the National …
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