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Dynamic genome evolution in a model fern
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… can be used to create compounds more efficiently than one strain could on its own.  In work published in  … Trends in Biotechnology  review piece by Yoshikuni and JGI colleagues Jing Ke and Bing Wang. Yoshikuni’s team has also … the CRAGE technology. Instead of only accommodating one DNA insertion, the new system, CRAGE-Duet, can …
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Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment
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JGI Accepts 17 Proposals for Community Science Program
Latest portfolio of approved proposals highlight biodiversity and how ecosystems are adapting to stresses. A … proposal, Frederick Colwell of Oregon State University and colleagues are interested in the microbial communities that … tree species that are widely grown as feedstocks for lignocellulosic and other biorefinery products. The work builds …
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Accelerating Metagenomics Discoveries with Deep Learning
… data gathered from whole samples rather than single cells or isolated strains, is easy to generate, but … sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers … Sevim’s work is part of an ongoing effort to build greater collaboration between JGI and scientists in the …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on … Ed Hall, an ecologist at Colorado State University in Fort Collins. He’s part of a JGI-supported project studying the … upstream and downstream, which is how the EPA, it’s one of the indices they use for stream health, they look at …
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Gone with a trace: cataloguing the disappearing gut microbes
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… issue of Nature, the study highlights the vast functional diversity of microbes by looking at protein function within … ability to break down lignin , the hardiest of plant components and a key barrier when breaking down biomass. He was … on a study which identified new genomes highlighting the diversity of white rot fungi in the genus Lentinula. Dan …
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Zwartia hollandica gen. nov., sp. nov., Jezberella montanilacus gen. nov., sp. nov. and Sheuella amnicola gen. nov., comb. nov., representing the environmental GKS98 (betIII) cluster.
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Game On: High School Students Drive Everglades Metagenomics Study
… class of 18 juniors.  He got turned down consistently, with one of his favorite answers being, “It would take a team of … They chose this location because much is unknown about the diversity of organisms (taxonomy) and particularly those in … plan their route, and had to adapt when they noticed while collecting the samples on canoes just how much change had …
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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