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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Webinars on Offerings & Capabilities
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… issue of Nature, the study highlights the vast functional diversity of microbes by looking at protein function within … ability to break down lignin , the hardiest of plant components and a key barrier when breaking down biomass. He was … on a study which identified new genomes highlighting the diversity of white rot fungi in the genus Lentinula. Dan …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in … National Laboratory (Berkeley Lab) uncovered a broad diversity of large and giant viruses that belong to the … datasets becoming available but also complementary single-cell sorting and sequencing of viruses together with their …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Gone with a trace: cataloguing the disappearing gut microbes
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Synthetic Biology Informatics Group
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Nikos Kyrpides
… global RNA virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. … map of urban microbiomes and antimicrobial resistance. Cell . 8674:00585-7. Nayfach S et al. 2021. CheckV assesses … Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global metagenomics. …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More recently, these … is not part of the standard analysis pipeline but can be done on request by the PI. We currently use the ‘Base …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… and pH levels vary wildly from spring to spring. These biodiversity hotspots harbor specialized microbial communities … Other surprises in the research include a similar loss of cell walls and a complex pattern of evolution for genes … bacteria have enzymes to synthesize or degrade plant hormones, meaning its land-dwelling counterparts could have the …
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Genomic analysis of 94 SEMIA strains isolated from common bean nodules: species diversity and genes related to nodulation, nitrogen fixation, and tryptophan metabolism
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