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Exploring Possibilities: 2022 JGI-UC Merced Interns
… valuable because in this time that I’ve been in my PhD program, I’ve been really focused with academia. And so this … made me explore every single possibility. And also specifically, it sparked my interest in bioformatics, so that’s … enough experience to make really good contributions to the project. Also my area of expertise over the past couple …
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JGI-KBase Panel at SACNAS
… of Energy-funded National Labs, User Facilities and Programs, and introduce best practices for anyone to get credit for their contributions to science. A panel of DOE researchers, program managers, and intern alumni will introduce projects designed for students to gain research experience …
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Cell by cell: population genetics in the wild
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Busting the Unbreakable Lignin
… energy: Cellulose, hemicellulose and lignin, cumulatively called lignocellulose, are the primary components of hardy … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the reference fungal  genome . …
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JGIota: Sequencing Shiitakes with David Hibbett
David Hibbett of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators published a paper tracing how these mushrooms have evolved.  …
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When “The Blob” Made It Hotter Under the Water
… samples were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … Lab), as part of Hallam’s approved proposal through the Community Science Program . The proposal focuses on uncovering the metabolic …
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Targeted single‐cell sequencing
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Introduction: Sequences and consequences
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds … the set of chromosomes from each ancestor is called a subgenome. Session and Rokhsar, building on work … specific procedure.” The rapport they built during this project and others (including the dissertation that preceded …
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Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities.
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Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii
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Yasuo Yoshikuni
Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to … synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and applications. This program has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also …
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