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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on semantic and … currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of … management and analysis system v.7.0: content updates and new features. Nucleic acids research Jan 2023 Camargo AP, …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to …
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Outreach Stories
Interested in reading more JGI intern and mentor success stories? Read more below. …
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How Microbes Can Protect Plants in Drier Straits
… looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to help make …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running smaller assemblies — so we head there for a sense of what this supercomputing looks like. …
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Boosting Small Molecule Production in Super “Soup”
Opportunity Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Accelerating Metagenomics Discoveries with Deep Learning
… a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Access to Rock Star Scientists
Through the JGI-UC Merced Genomics Internship, graduate students Candace … have done the groundbreaking work you’ve been reading about for years! And you can ask them about it! And they’re super …   “This summer internship has broadened my skills and understandings in the field of genomics. This has reinforced …
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Digging into Microbial Ecosystems Deep Underground
… deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … work builds off a proposal approved through a collaborative science initiative called Facilities Integrating … due March 16, 2022 to freely access resources at multiple DOE user facilities through the FICUS research support …
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Chomping Toward Better Plastic Recycling
We know all kinds of things about plastic – except, how to break it down for recycling. But some hungry insects can digest plastic. … So researchers are taking a look at how these critters process plastic, to improve plastic recycling by following …
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VEGA Symposium
Hosted by the JGI and co-organized with NIST,  the goal of the Viral … to all of our in-person and virtual attendees! Click here for the event photos. Keynote Speakers Katrine Whiteson , UC … Libusha Kelly , Albert Einstein College of Medicine JGI Organizers Simon Roux, Jonelle Basso, Maureen Berg, …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … molecular protocols.  Finally, his team utilizes new technologies, e.g. acoustic liquid transfer and … in metabolically active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a …
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