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Genetic dissection of natural variation in oilseed traits of camelina by whole‐genome resequencing and QTL mapping
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Nikos Kyrpides
Camargo AP. et al. (2023) Identification of mobile genetic elements with geNomad. Nat Biotechnol . Epub. Neri … of Human Microbiomes Reveal Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | …
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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, functional annotation and methylomics) that …
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Synthesis
… capabilities support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
As warm-adapted microbes edge polewards, they’d oust resident tiny … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … research cruises, they dipped their self-closing containers into sea water to sample algal communities along transects …
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JGI@25: From Life at the Extremes to Editing Genomes
… refine and improve the process of finding novel Cas genes and CRISPR systems. The collaboration has resulted in … can target single-stranded DNA. Such proteins have been adapted for therapeutic application development by Mammoth … Banfield. (Banfield’s recounting of that first – and subsequent – meetings is here .) Working with the JGI, Banfield …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species … usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, extracting … stitch the pieces together and attempt to put them back into the original genomes. These metagenome-assembled …
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JGI on the 2021 Highly Cited Researchers List
… with a reference switchgrass genome to associate climate adaptations with switchgrass biology. The information could … in natural ecosystems, and functionally explore viral genetic diversity toward innovative biotechnological and … the NeLLi 2021 Symposium: From New Lineages of Life to New Functions. The seminars focus on experimental innovations, …
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Effects of Polar Light Cycle on Microbial Food Web
A long-running time-series study offers a first glimpse into a full season’s cycle of this polar environment. This … more space on Earth than any other ecosystem. Therefore, understanding the microbial activity that dominates these … over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  Microbiome shows …
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A genetic linkage map for the ectomycorrhizal fungus Laccaria bicolor and its alignment to the whole‐genome sequence assemblies
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High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome
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Genetic mapping and prediction of flowering time and plant height in a maize Stiff Stalk MAGIC population
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