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Jasmyn Pangilinan
… tools and analysis support for user science, with a focus on metagenomes. Passionate about automation and collaboration, she works to …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  … Tel Aviv University in Israel, the National Center for Biotechnology Information, and the U.S. Department of Energy … one of the project co-leads and first author of the study. Members of the Tel Aviv and NCBI teams, who were …
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in many regions due to more extreme weather events … a limiting factor – before or after flowering. For the study, the team grew two sorghum varieties: one that …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for … genomes, but unfortunately there are not many available to study. This is because most fungal clades have no reference … because fungi are very diverse organisms with potential biotechnology applications in a range of fields including …
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JGI-UC Merced Interns Share Their 2021 Experiences
… JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional development enrichment activities. For some students in … Evolution of the Mitochondria Internship … Cross Species Integration of Single Cell Transcriptomes …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a tree … Remarkable Similarity Despite Vast Diversity For this study, researchers collected soil samples from four sites: … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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User Executive Committee Charter
… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their … and the annual user meeting. The UEC also acts as a liaison to the user community and the broader scientific …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to … the Biological Small-Angle Neutron Scattering (BioSANS) instrument at the Center for Structural Molecular Biology (CSMB) … You are requesting access to capabilities, instrumentation, and analytics, and each of the facilities. …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the … Polyploid Genomes in a Pan-genomic Context For the study, partly enabled by the JGI’s  Community Science … Aberystwyth University (UK); HudsonAlpha Institute for Biotechnology; University of Massachusetts Amherst; and, Tomsk …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, … performed in its User Facilities, is a legally binding contract.   All User researchers must have their … After your proposal is approved, the Contracts Officer will send required paperwork to your …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … A software tool  recently described in  Nature Biotechnology  called geNomad identifies and classifies MGEs … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to …
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