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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single protein. Gene expression in eukaryotes was long held to be … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein … The Impact The initial analysis highlights abundances of gene annotations that provide insights into the nutrients … Those similarities, based on their ratios of small DNA sequence fragments called tetranucleotides, are a way to …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many more meetings and … on, from the myriad of omics analyses for understanding gene expression in plants and the environment, to the JGI’s … quantitative and predictive measurements that reflect the potential for long-term impact, relying instead on anecdotes …
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Statement on the Use of Genomics Data
… the HGP, the JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to NCBI as well as … first. For nearly 40 years, the International Nucleotide Sequence Database Collaboration (INSDC) has managed the … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Accelerating Metagenomics Discoveries with Deep Learning
… rather than single cells or isolated strains, is easy to generate, but difficult to assemble and interpret. The … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to … calls. Nearly 200 Terabases of data are expected to be generated for the accepted proposals, said Susannah Tringe, … of France’s Institut de Biologie. His team proposed to sequence  Chaetoceros microalgae, or diatoms. Through the …
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Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion
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Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea
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Genome Sequences of Actinobacteria from Extreme Environments in Colombia
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