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Evolution of a Fungal Gene Expression Regulator
… least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like it, are uncovering the true … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the …
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An Automated Tool for Assessing Virus Data Quality
… are being recovered and identified from environmental samples (metagenomes). However, the quality and completeness … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked …
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In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes
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Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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The Expanding Universe of Methane Metabolisms in Archaea
… metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data … the 10 MAGs reconstructed in the study, five were from undersampled or previously undescribed lineages, and the other …
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Boosting Small Molecule Production in Super “Soup”
… keep processes running smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal Alper … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … systems for metabolic pathways that we plan to offer to users in the near term,” added JGI Director Nigel Mouncey . …
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Learning to Look
… will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists at … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could … Scientific Computing Center , another DOE Office of Science user facility.   …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Boosting Small Molecule Production in Super “Soup”
… keep processes running smoothly. As  reported August 26, 2021, in  Nature Communications , researchers led by Hal Alper … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … systems for metabolic pathways that we plan to offer to users in the near term,” added JGI Director  Nigel Mouncey . …
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Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii
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