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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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The Power of One, Amplified
… of bioinformatics tools for  extracting snippets of microbial genomes directly from environmental sequence data, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was performed by Danielle Goudeau and Rex Malmstrom of the JGI’s Microscale Applications group . Cells were randomly …
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SIPs with Standards
… Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few …
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Outreach Stories
… Interested in reading more JGI intern and mentor success stories? Read more below. …
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Len Pennacchio
… Len Pennacchio is the JGI's Deputy of Genomic Technologies. oClick to learn more about the offerings and capabilities we offer JGI users to help advance their science. … The Deputy of Genomic Technologies serves as the JGI’s primary point of contact for all High-Throughput Data …
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of … and management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) and a chemical … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 150 archaeal viruses had been previously identified. The JGI researchers surveyed publicly available data in the …
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Defining a Pan-Genome for Antarctic Archaea
… adapt from marine to hypersaline conditions by studying the microbial communities in Antarctic lakes, some of which have … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his … The genome and metagenome data are available through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) …
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Supporting Global Research into Actinomycetes
… and the focus of a  recent paper published in  Microbial Genomics .   “Studying actinomyces, especially … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, as well as a … Secondary Metabolites research group . That group, led by JGI Director Nigel Mouncey, has launched its  Secondary …
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All Events
… The JGI is represented at conferences year round; find out where …
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