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This series is the story of a giant metagenome assembly from Wisconsin’s Lake … a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge …

… (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of … … Implementation of the Index of Cell Identity as an R package … Education … Selected Publications … Software …

In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … Audio Two special days occur in April: the 50th celebration of Earth Day on April 22, and DNA Day on April 25. Since … at Colorado State University in Fort Collins. He’s part of a JGI-supported project studying the world’s rivers and …

Massie S. Ballon is the Communications and Outreach Manager at the JGI. Prior to this role, she served as the primary storyteller and social media manager for the JGI. She produced both text-based and … in science communication from UC Santa Cruz. She is one of the Biosciences Area representatives to Berkeley Lab’s …

Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … of specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both reference … the US Department of Energy under contract no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center …

Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … host archaea – and how the  microbes resist. The battle waged below the Earth’s surface is reconstructed by combining … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst …

… human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed sequencing, assembly, and improvement … feedstocks. Schmutz provides scientific project management for the reference eukaryotic genomes produced by the …

Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been … So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put … In this episode: the software evolution that made metagenome assemblies like this possible. …