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Streamlining Regulon Identification in Bacteria
… genes that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential … sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… program . Her research project, “Microbial Community Structure and Methane Production in California’s Canal … Kaze took on the challenge of explaining her research using the ten hundred most commonly used words in the …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Fishing for Novel Cellulose Degraders
… at Lawrence Berkeley National Laboratory (Berkeley Lab). Using a single-cell screen, they can now identify microbes … the team then used DNA synthesis and cloning, followed by protein in vitro expression and mass spectrometry-based … ‘Tackling microbial-mediated plant carbon decomposition using “function-driven” genomics’. …
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The crystal structures of the tri-functional Chloroflexus aurantiacus and bi-functional Rhodobacter sphaeroides malyl-CoA lyases and comparison with CitE-like superfamily enzymes and malate synthases
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities
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Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage
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High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats
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Impact of single-cell genomics and metagenomics on the emerging view of extremophile “microbial dark matter”
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Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics
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