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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and JGI user science … focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with … occupy more space on Earth than any other ecosystem. Therefore, understanding the microbial activity that dominates … there is a strong chemical and salinity gradient — and green sulfur bacteria,  Chlorobium , blooms. The specific …
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Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface
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JGI-UC Merced Interns Share Their 2021 Experiences
… 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research … in professional development enrichment activities. For some students in the 2021 cohort, this was their first … for Complete Categorization of Genomic Variations … Comparative and Functional Genomic Analysis of Genus …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS … projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy … below the ground, influencing the production of microbial greenhouse gases and volatile organic compounds. This was …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to … Nearly 200 Terabases of data are expected to be generated for the accepted proposals, said Susannah Tringe, JGI User … Many fungi have beneficial symbiotic relationships with plants and bacteria; in many instances, fungal physiology is …
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Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into … these boggy wetlands produces an estimated 5% of annual greenhouse gas emissions. Understanding how sphagnum, a … by minimizing flood risks and filtering water. Peat formed there over thousands of years sequesters more carbon …
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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the … compounds may also be involved in how the fungi metabolize plant biomass, which could inform how scientists can more …
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to … tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it … , a team of researchers likewise honed their tool before felling their research problem: at a genetic level, how …
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