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Extracting the Secrets of Secondary Metabolites
… Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … hit the scene in 2019. Now, that power is poised to grow exponentially by combining it with CRISPR.  By employing CRAGE, … That work by JGI researchers was published April 2022 in Cell Chemical Biology . When it comes to insect killer P. …
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You Can Move, But You Can’t Hide
… entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … distinct approaches to identify both viruses and plasmids; one is marker gene-based, and the second is a neural network …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… will target sustainable energy solutions, focusing on lignocellulosic thermophiles and polymer degradation.  “We are … The other seven researchers are returning, including one previous New Investigator awardee.  The CSP Annual call …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of … generate and manipulate the human language—are well positioned to help enhance our understanding of life’s genomic … of DNA; genes analogous to paragraphs;  genomes equate to complete written works. Using large amounts of genomic data …
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Gone with a trace: cataloguing the disappearing gut microbes
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary … contiguous sequences (contigs) of proviruses flanked on one or both sides by genes from the host organism. With the …
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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)
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Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules
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Crysten Blaby-Haas
… user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and engineering. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working … PhD, Microbiology and Cell Science, University of Florida NIH Postdoctoral …
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