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Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists

Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities

Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

Detection of S83V GyrA mutation in quinolone-resistant Shewanella algae using comparative genomics

Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage

Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea

Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes

Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae

An Inside Look at How Plants and Mycorrhizal Fungi Cooperate

… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and analyze the single nuclei and spatial transcriptomics data this work leverages. These experiments focused on two … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …

Katherine Louie

… spectrometry workflows for polar and nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … Sci Rep. 2013;3: 1656. … Education … Selected Publications …

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

Lawrence Berkeley National Laboratory is a U.S. DOE Office of Science
national laboratory managed by the University of California.