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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial … familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have … so understanding sorghum’s survival secrets could change not only how we use and grow sorghum, but other … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
Register here Book your stay at the conference venue This inaugural event will bring together researchers across major ecosystems and … and applying laboratory ecosystems to help transition microbiome science from largely observational to …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI … graduate student Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer … my existing skill set to a new scale, which presented a host of interesting and ultimately rewarding challenges. …
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a … and soil from Washington and Oregon. The cuttings included genotypes from the DOE BioEnergy Science Center (BESC), … fungi (mutualist symbionts that induce structural changes in plant roots),  M. elongata  doesn’t have as many …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As … affect how microbes cycle nutrients and adapt to climate change. …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … the viruses repeatedly attempted to infect and destroy the host archaea – and how the  microbes resist. The battle … lyse the microbial cells. This demonstration of the virus-host arms race in uncultivated yet abundant subsurface …
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Methane Makers in Yosemite’s Lakes
… (a marmot!) as they’ve sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains. … but varied. They’re a great way to see how climate change affects freshwater ecosystems, and how those …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even … their frigid environment, Mock pointed out that as climate change warms polar waters, changes in trace metal concentrations will also affect …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have … For the past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, … EM, Pennacchio LA*, Visel A * (2013). Rapid and Pervasive Changes in Genome-wide Enhancer Usage during Mammalian …
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