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… sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to find novel functions that … B.Sc. Biochemistry, University of Applied Sciences Mannheim (Germany) M.Sc. Molecular Microbiology, …

… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a … genetic material with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …

… this “ data tsunami ,” as Kathy Yelick of the Computing Sciences Area at Lawrence Berkeley National Laboratory … to create pipelines, tools and other standardized data resources that the global research community can access and use … at the JGI and Berkeley Lab were developing specific programs to handle this scale of data. Part 2: Souped Up …

… who represent the scientific areas of plant genomics, DNA synthesis and metabolomics, respectively. To …

… Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and … management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial …

… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in …

… Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or … How To Use ApE To save your ApE file as a Genbank file, simply go to File -> Save As …

… helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … edits affect functionality.  CRAGE allows for the transplanting of these BGCs from one organism into an alternate …