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Holo‐omics disentangle drought response and biotic interactions among plant, endophyte and pathogen
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Label-free structural imaging of plant roots and microbes using third-harmonic generation microscopy
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship … internship opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from … researchers and help expand or develop more internship programs like the JGI Internship Program during my STEM …
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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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Webinar: MycoCosm Tutorial
… for genome sequencing, or only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and the microbial … MycoCosm and Fungal Program pages ( https://jgi.doe.gov/our-science/science-programs/fungal-genomics/ ). You can also contact us for … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Quantitative DNA Stable Isotope Probing Identifies Active Microorganisms Assimilating Volatile Fatty Acids in Full-Scale Enhanced Biological Phosphorus Removal Processes
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of … of community-building efforts in the field of viral ecogenomics. For this role, Dr. Roux can rely on more than 10 … Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is also … how the JGI supports the entire data life cycle through resources including the JGI portals, and our broader data …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen … and  Nikos Kyrpides , was  recently published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  Environmental … (EMSL) , successful applicants can also access resources at NEON. This includes access to the NEON … Find out more about the FICUS program at:  jgi.doe.gov/user-programs . Q:  How can I get that NEON Biorepository Letter …
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An Addiction Crucial to a Fungus’ Reproduction
… regulate key components of its reproductive machinery The Science To better understand how beneficial organisms … endobacteria, the Rhizopus fungus cannot act as a plant pathogen, it cannot reproduce asexually, and … As these oil-producing fungi are potential sustainable sources of alternative fuels, so understanding …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a … genetic material with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …
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