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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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Work With the JGI! Tips for a Winning CSP Proposal
… The JGI’s Community Science Program gives researchers access to all kinds of sequencing, ‘omics and bioinformatics capabilities — and … episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and project manager Miranda …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational … system. “We then looked into many more samples and refined our methodology,” Neri said. “Our team grew and so did the …
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Frederik Schulz
… Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of … sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and … B.Sc. Biochemistry, University of Applied Sciences Mannheim (Germany) M.Sc. Molecular Microbiology, …
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The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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Neha Varghese
… key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of advanced …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from … In the last two episodes, we’ve covered the specialized software and supercomputers behind this project. But every …
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Ian Blaby
… analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at … B.Sc. (HONS) – University of Wales, Cardiff, Genetics Ph.D. – University of …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, including … the entire cell.” The JGI team then used single cell genomics to analyze five of the bacterial cells on the …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and … management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial …
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Draft genome sequence of Chryseobacterium limigenitum SUR2T (LMG 28734T) isolated from dehydrated sludge
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