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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
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Cataloging the Microbes that Manage the Health of River Systems
… collect samples from across the country to standardize the process. They noted this may be the first publicly … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established … river microbiome datasets are also available through the DOE Systems Biology Knowledgebase, allowing researchers to …
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Ancient Algae Reveal Secrets of Plant Evolution
… them to adapt to life on land. Learning that these genetic tools existed in close algal relatives  to terrestrial … Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced … a great opportunity to study and learn something totally new during my Ph.D. What is/has been one of your favorite … the door for me in the sense that I learned many different tools in bioinformatics research. Also, it consolidated my …
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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Tracking the Origins of Methane-Producing Microbes
… Chan Zuckerberg Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … the microbes into small pools of cells that were then sequenced separately. From these samples, 111 … These two things combined led us to conclude that our new methanogen did not belong to the Euryarchaeota, the …
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Hybrid error correction and de novo assembly of single-molecule sequencing reads
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & … invited talks emphasize how the research infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the JGI offers through …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and … lake east of California’s Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI (isolates here , here and here ), and …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… In the last two episodes, we’ve covered the specialized software and supercomputers behind this project. But every …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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