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Host species and geographic location shape microbial diversity and functional potential in the conifer needle microbiome
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Reduced methane emissions in transgenic rice genotypes are associated with altered rhizosphere microbial hydrogen cycling
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … Soil Microbiome SFA. She serves as Secretary within the Microbial Ecology Section of the Ecological Society of … biogeochemical cycles in soils and sediments and plant-microbial interactions in crops. He has been a PI or Co-PI …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired … interactions to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their … Merced in Spring 2019.) Mentor: Ben Cole, Genomics of Plant-Microbial Interactions What effect has your summer …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … because they often need unique conditions and a specific microbial host to replicate. Sequencing genetic material … 16. The same year, the JGI expanded its existing Integrated Microbial Genomes & Microbiomes database to include a …
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An Integrated Dataset to Understand Ecosystem Interaction
… the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand … data set will help identify how different elements of the ecosystem interact and respond to changes in the … and small molecules produced by the trees and associated microbial communities. This revealed key metabolic pathways …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both …   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days … a little bit of both of the pathways.  ALISON: Karolina studies these CAM-C3 hybrids. KAROLINA:  Some of these …
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The Rhizosphere Responds: Rich Fen Peat and Root Microbial Ecology after Long-Term Water Table Manipulation
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Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium
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Soil exchange rates of COS and CO18O differ with the diversity of microbial communities and their carbonic anhydrase enzymes
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Microbial Community Analyses Inform Geochemical Reaction Network Models for Predicting Pathways of Greenhouse Gas Production
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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
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