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User Support Analysis Group
… computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our …
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JGIota: Sequencing Shiitakes with David Hibbett
David Hibbett of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators published a paper tracing how these mushrooms have evolved.  …
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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …
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Targeted single‐cell sequencing
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Introduction: Sequences and consequences
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Science Programs
The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the scientific impact of user projects, develop cutting edge approaches for and with users, and create …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the … biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory … with a view to developing a deeper understanding of sequence-based gene function. … B.Sc. (HONS) – University of …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, … build proteins. What Wint and her mentors discovered in the genomes helped to reinforce Charles Darwin’s “survival of … to explain their work and its impacts at Berkeley Lab and beyond. Last summer, Wint hosted a virtual four-day data …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most of them archaea. The …
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Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter▿ †
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Identification of novel biomass‐degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation
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