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… And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when they set out … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …

… Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics … highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) …

…   For years, researchers have known that many datasets miss a key part of microbial genomes: the mobile … Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series …

… Back in 2011, JGI-supported researchers published a paper in the journal … metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …

… from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …

… for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The … would allow researchers to focus on specific microbes within metagenome samples and associate their sequences with … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… (Clustered Regularly Interspaced Short Palindromic Repeats) is the leading tool for accurately editing genomes, its … payloads directly into diverse microbes. Combining CRAGE with CRISPR provides researchers with a powerful addition to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational …

… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to … an interactive public database for the research community. With more than 13 million BGCs in the catalog at the time of … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science presentation … Polymorphisms Created by Transposable Elements … Cross Species Integration of Single Cell Transcriptomes … Evaluation of Binning Tools for Microbial Eukaryotes in …

… metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell … cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …