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Soil compartments (bulk soil, litter, root and rhizosphere) as main drivers of soil protistan communities distribution in forests with different nitrogen deposition
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Frederik Schulz
… and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded project, Dr. Schulz established a … B.Sc. Biochemistry, University of Applied Sciences Mannheim (Germany) M.Sc. Molecular Microbiology, …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of … deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Boosting Small Molecule Production in Super “Soup”
… strains. (Blake Rasor) Think of cells as tiny factories: within their walls they have both the machinery to make … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… and other traits when migrating back to the ocean. The Science Scientists have discovered flagella in an unexpected … are bacteria that act like tiny natural engineers with special skills to break down pollutants and recycle … they likely cooperate with other microorganisms in their community to do so.  In addition, scientists noted that the …
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Tracking the Origins of Methane-Producing Microbes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … most of them archaea. The Quake lab had previously collaborated with the JGI on a proposal using this approach through the … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … switchgrass transformation pipeline and, in collaboration with industrial partners, generated hundreds of transgenic … his postdoctoral studies at the Carnegie Institution for Science where he studied the molecular basis of a plant …
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A Grass Model to Help Improve Giant Miscanthus
… insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for … Department of Energy (DOE) Bioenergy Research Center, along with researchers from the Energy Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … patterns of Puerto Nuevo’s coastal waters and sediment with collaborators at the Center for Scientific Research and … a strong role in my career interests post-Ph.D. in the sciences. “ Ul-Hasan was one of two UC Merced graduate …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through … Agreement (2003), the JGI recognized the need to engage the community to inform necessary changes to JGI data policies. … to balance its  Data Release and Utilization Policies with the DOE mandate to provide data access widely to the …
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Virus Discoveries that Keep Getting Bigger
… quickly accelerated understanding of giant viruses. The Science In the last thirty years, in environments all over … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … , diversity exists in infectious cycles, as well, with viruses relying on different strategies for initiation, …
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