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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … studies to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to … and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass conversion to … thrives in the Arctic, and how different types of microbes form communities. As temperatures fluctuate, salt levels … annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds light on the …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… the Energy Sciences Network (ESnet) have been recognized for outstanding achievements in science, technology, and … Science user facilities. The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley … results this year by assembling a collection of large datasets that will enable scientists to explore and collect …
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Adopt-A-Genome
… write reports, and publish first-author papers, making the data available for future research. Hear from Rekha Seshadri (JGI) and Matt Escobar (California State San Marcos) about how the Adopt-A-Genome …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for biotechnology education as part of a course-based …
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JGI@25: The Little Alga That Could
… to those who study it) a powerful reference organism for studying photosynthesis and cell motility. It’s also a model for studying lipid production in other algae that may be … JGI’s early sequencing of C. reinhardtii became available, data mined by the JGI shows that those sequences have been …
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Katherine Louie
… to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts to … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research … capable of running smaller assemblies — so we head there for a sense of what this supercomputing looks like. …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada … ecology. We also know little about where to collect the California Cone Snail  Californiconus californicus (and cone …
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JGI at the AGU Fall Meeting
… hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm … State University (short talk): “Predators of the Deep: virus-host dynamics in the terrestrial subsurface” 2pm …
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Waiting to Respire
… 2019 in Nature Communications , two research teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria and … address some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science . …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) … infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the …
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