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From Berkeley to Binghamton: Tracking Strawberry Evolution
… the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … his words, the history of the strawberry is complicated because, “when you have comparisons to other closely related … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… novel technique to access high-quality genomic information using minute quantities of DNA derived from individual … at the bottom.  Perhaps most notably, JGI’s Microbial Program head Tanja Woyke and her colleagues harnessed the … metagenomics and single cell genomics have afforded JGI users and the larger research community a means to access …
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii
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Examining the Relationship Between the Testate Amoeba Hyalosphenia papilio (Arcellinida, Amoebozoa) and its Associated Intracellular Microalgae Using Molecular and Microscopic Methods
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Honey Bee Gut Microbiota Divvy Up Dinner
… of the National Academy of Sciences . The team focused on the dominant bacterial clades shared between honey … pollen’s pectin and hemicellulose are degraded mainly by just two clades:  Gilliamella,  which mostly resides in the … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis
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JGI@25: Building a Better Bean
… may not seem to amount to much, the common bean (Phaseolus vulgaris) is actually a vital source of protein in many … works on food crops specifically, “[At the JGI] we do use Phaseolus as a test model quite frequently for R&D in … trait. Traditionally beans have had a shelf-life about roughly 6-9 months before their color begins to …
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Mindfully Moving JGI
… from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in … home located in the heart of the Berkeley Lab main campus. On Monday, November 11, a week after they’d been  moved … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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JGI@25: From Life at the Extremes to Editing Genomes
… ecosystems around the world, conducting iterative searches using statistical analyses to continuously refine and … and Management.” So begins a passage from Doudna’s book about her meeting with Banfield. (Banfield’s recounting of … doi: 10.1016/j.molcel.2018.12.015. Harrington LB et al. Programmed DNA destruction by miniature CRISPR-Cas14 …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began soon after … reference sequence of the complex switchgrass genome , using samples from common gardens growing across the … involved researchers at the University of Texas at Austin, HudsonAlpha, and the JGI. Building off this work, …
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