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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?
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Genome sequence of Nitrosopumilus adriaticus CCS1 assembled from an ammonia-oxidizing enrichment culture
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Eight genome sequences of bacterial environmental isolates from Marr Pond, Antarctica
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science … Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities … Linking lignin engineering to drought stress resilience: RNA-seq … Elucidating Sphagnum microbiome genetic interactions for improved …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … is a division of labor by these bacterial groups. But why the strain variability? The authors think the reason may … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … arms race in uncultivated yet abundant subsurface organisms was  recently reported in Nature Communications. …
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The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation
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Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
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