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The Surprising Structure of a Shrub Willow Sex Chromosome
… first time, the sex chromosomes of shrub willow have been sequenced with sufficient resolution to analyze their … the study’s international team, which included scientists from Oak Ridge National Laboratory and the U.S. Department … The JGI sequenced the shrub willows through the  Community Science Program , using long-read sequencing to …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last … other standardized data resources that the global research community can access and use to manage the information being … Podcasts ,  Spotify or wherever you get your podcasts) Microbial ecologist and JGI user Trina McMahon has been …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of … and metabolomics. Proposals must request capabilities from both JGI and the Molecular Foundry.  Submission …   Learn more about our individual calls and other opportunities …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the … A 2021 Nature paper announcing a high-quality reference sequence of the complex switchgrass genome , using samples from common gardens growing across the country. The national …
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans … percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien Duplessis of … JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       …
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A Model System for Perennial Grasses
… (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million years ago. The … candidate bioenergy crop, switchgrass. Through the JGI’s Community Science Program , JGI sequenced and assembled near-complete genomes of P. hallii …
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Linking microbial Sphagnum degradation and acetate mineralization in acidic peat bogs: from global insights to a genome-centric case study
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Genome of the Root-Associated Plant Growth-Promoting Bacterium Variovorax paradoxus Strain EPS
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The GreenCut2 Resource, a Phylogenomically Derived Inventory of Proteins Specific to the Plant Lineage*
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Marine algae and land plants share conserved phytochrome signaling systems
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