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Fungus Fuels Tree Growth
… matter, or as an endophyte, living between a plant’s root cells. The fungus is almost always found among and within … and without an inoculation of the  M. elongata strain PM193 added to a diluted soil mixture, publishing  the results … M. elongata  seems to encourage the plant to have leakier cell walls and weaker defenses in general; the fungus …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… to a type of archaea called  Euryarchaeota . These ancient, single-celled organisms thrive in most  environments devoid of … to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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How Filamentous Fungi Sense Food
… decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and hemicellulose. The Impact N. crassa is the model organism for … under US Department of Energy Contract DE-AC02-05CH11231, a Joint Genome Institute Community Science Program grant …
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Fungal Friends or Foes in Plant Roots
… plants (endophytes). These include genes that degrade plant cell walls and break down plant sugars. The results also … of the key community participants and enabling future metagenomics studies.   … Plant Microbiota (SPP DECRyPT 2125)’ and the Cluster of Excellence on Plant Sciences (CEPLAS), both funded by the …
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MycoCosm Tutorial
… equipped with interactive web-based tools for comparative genomics and community annotation. Presented by Igor …
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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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From Textbook to Real World Applications
… biology, Robert Evans and Jan-Fang Cheng in the Functional Genomics group took it upon themselves to mentor them. …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… Kaze was part of the  2018 cohort of the JGI-UC Merced Genomics Internship Program, and is part of  Mark Sistrom’s … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Doubling Down on Known Protein Families
… only able to clearly identify what falls within that single beam. When it comes to microbial communities, … big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now …
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Dispatches From JGI Interns
… interns from the 2021 cohort describe their deep dives into genomics, computational tools, and big data.  …
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