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… to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop … doesn’t yield enough gallons of fuel per acre to compete with gasoline. Yet.  In 2010, soybean became the first legume species with a published complete draft genome sequence. At the …

… further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … payloads directly into diverse microbes. Combining CRAGE with CRISPR provides researchers with a powerful addition to … that produce them. The Impact Secondary metabolites are microbial compounds produced in response to hardship or …

… that led to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples … Program, and already available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos …

… the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand … and small molecules produced by the trees and associated microbial communities. This revealed key metabolic pathways and metabolites associated with the tree’s stress response. Finally, using …

… a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the … this may be the first publicly available, river-focused microbial resource that provides information at multiple … of water help regulate. However, the microbes also interact with compounds like fertilizers and microplastics that might …

… The JGI is eager to work and share our tools with a widening circle of researchers. That’s why each year we look for novel research projects — aligned with DOE missions and from PIs who have not led any … of desert grasslands to the metabolic savviness of microbial ecosystems at the forest floor and along ocean …

… Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship … Comparative Analysis What effect has your summer internship with the JGI had on your plans to pursue a STEM career?
 … Merced in Spring 2019.) Mentor: Ben Cole, Genomics of Plant-Microbial Interactions What effect has your summer …

… of the JGI is to provide the global research community with access to the most advanced integrative genome science …

… not sequenced by JGI, if PIs are interested are working with us please contact me at [email protected] 5.  Q: If … is based on a model that is not based on a genome model with PhycoCosm, how do we go about getting it in your … on the gene model, that should be ok generally. We can work with you to re-map the data. If your rna-seq data doesn’t …

… Users were previously limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( … are currently limited to: Public data: datasets associated with completed projects that are eligible for public … + annotations) For IMG & Mycocosm: Data that is associated with an ITS project ID (AP or SP) Q: What JGI Data Policy …

… Global chocolate brands can’t exist without cocoa According to the  International Cocoa … metric tons . The global chocolate brands couldn’t exist without cocoa.  But today the plant is under threat due to … of the world’s largest buyers of cocoa, is collaborating with others to develop healthier and more productive cacao …

… published in  Nucleic Acids Research .  ID’ing RNA viruses with ease : Searching for RNA sequences within a database can be like combing for the proverbial … of most ferns in many ways, including its large genome with numerous chromosomes. This recent study, including work …