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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth Day … March 17, 2020, a shelter-in-place order for all residents took effect in six San Francisco Bay Area counties. The JGI, … computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day … and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science … computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s … This episode, we visit Los Medanos Community College to see EcoFABs in action in Jill Bouchard’s BIO 21 lab …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … the platform delivers rich metabolite profiles from diverse biological and environmental samples in support of … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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The CC–NB–LRR protein BSR1 from Brachypodium confers resistance to Barley stripe mosaic virus in gramineous plants by recognising TGB1 movement protein
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How Maize Makes An Antibiotic Cocktail
Maize produces a family of compounds that protects it against … at least 15 zealexins, they suspect there are even more to find. Zealexins are produced in every corn variety and … terpene synthases and cytochrome P450s — that catalyze multiple products, resulting in many antibiotics. To uncover …
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Nandita Nath
Nandita is involved in developing new methods to improve genome … single cells and to build sequencing libraries from minimal DNA input without amplification. …
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VEGA Symposium
Hosted by the JGI and co-organized with NIST,  the goal of the Viral EcoGenomics & Applications (VEGA) symposium was to bring together a “Viral EcoGenomics” community to foster … Antonio Camargo, Frederik Schulz, Emiley Eloe-Fadrosh External Co-Organizers Joanne Emerson (UC Davis), Vivek Mutalik …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to … of efforts to develop pangenomes for these species, this approach would also allow researchers to learn more about … George diCenzo of Canada’s Queens University aims a multi-omics approach toward generating “with unprecedented …
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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion nucleotide bases of DNA sequence to the public data repositories over its now 20-plus-year …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
As set out in the JGI Five-Year Strategic Plan – “Beyond … Collaborative Genome Science” – through early introduction to the resources and disciplines advanced by the JGI, we … In doing so, it is our ambition to further develop a more diverse and inclusive pool of talent for career …
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