Results

John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. … and the mechanisms by which plants interact with their microbiomes. In addition, his group conducts comparative … grass that is well suited to experimental manipulation in the laboratory because of its compact genome, diploid …
Learn more
Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a … features and functions. Making connections between the structures and functions of the genes encoded in the genome … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
Learn more
JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have … For the past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
Learn more
Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
Learn more
Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a … elongata enjoys a dual lifestyle; it can thrive in the soil as a saprophyte, living off decaying organic matter, or … fine-tune their engineering efforts of both plants and root microbiomes to grow energy crops more efficiently. Summary …
Learn more
Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in … Couradeau, J.S. et al. 2019. Probing the active fraction of soil microbiomes using BONCAT-FACS.  Nature Comm 10(1) 1-10 …
Learn more
Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions … researchers worldwide.  Q:  To what extent is natural soil a limit to identify molecules exchanged between plants and microbiomes during interactions? Is it reliable performing …
Learn more
Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
Learn more
The crystal structures of the tri-functional Chloroflexus aurantiacus and bi-functional Rhodobacter sphaeroides malyl-CoA lyases and comparison with CitE-like superfamily enzymes and malate synthases
Learn more
The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
Learn more
Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help … environmental conditions may affect metabolic activity of microbiomes. This is key because these examples were picked …
Learn more
Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities.
Learn more