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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
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Enhanced terrestrial Fe(II) mobilization identified through a novel mechanism of microbially driven cave formation in Fe(III)-rich rocks
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JGI User Executive Committee Expands
Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department … her institution and Bioenergy Research Centers. Sogin is a microbial ecologist at UC Merced, where her group focuses on … of Delaware. His lab is interested in how microbial communities can efficiently degrade complex polymers that …
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Uncovering Novel Genomes from Earth’s Microbiomes
… have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … (KBase) . Metagenomics is the study of the microbial communities in the environmental samples without needing to … of these MAGs. “Just bringing this dataset into KBase has immediate value because people can find the high-quality MAGs …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… chilly waters of Antarctica, tiny ocean-dwellers called phytoplankton play an outsize role in cycling carbon and … and activity of phytoplankton genes and looking at how communities of these microalgae interact, researchers have … in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom Fragilariopsis cylindrus . At …
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections
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Yasuo Yoshikuni
Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, … sugar polymers in macroalgae and developing the first microbial platform technologies unlocking the potential of … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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JGI@25: From Life at the Extremes to Editing Genomes
Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense … can target single-stranded DNA. Such proteins have been adapted for therapeutic application development by Mammoth … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the … Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. … to inform the engineering of stable, synthetic microbial communities to take advantage of their joint metabolisms. …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass  Miscanthus sinensis has … Analysis of the genome sequence also provides insights into how the multiple chromosomes of  Miscanthus arose by …
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