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… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps … scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To …

… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around … a timeline like this, researchers would normally craft a genetic clock based on its divergence with a  different … grant to J. Eisen, J.J.S. and J.L.O. from the US Department of Energy Joint Genome Institute Community Sequencing …

… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused … Genomics Lead Dan Rokhsar , Molecular Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal …

… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … enzymes these fungi use to break down wood, and compares genetic diversity between cultivated and wild shiitake … wall degrading enzymes (PCWDEs), including carbohydrate-active enzymes, oxidoreductases, and cytochrome P450s. This …

… In honor of the JGI's 25th anniversary in 2022, we have … data portal Phytozome. The combination of field data and genetic information has allowed the research team to … environments, the 4X variety was more of a specialist. The genetic variation that allows the 8X variety to be a …

… Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The … developing and harnessing single-cell methods to access the genetic material of uncultivated microbes and link their …

… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI … interactions to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their …

… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … to core nitrogen metabolism, this team built a phylogenetic tree using bioinformatic software called FastTree … specificity. However, different organisms use different active residues to achieve this, a bit like having slightly …

… Over 40 percent of the cereal crop’s genes respond to drought stress. The … to produce good yields under water limiting conditions. Epigenetic Control of Drought Response in Sorghum (EPICON) is a … and how these conditions impact the crop and its microbiome. For three consecutive years (2016-2018), …

… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at … and the interactions of plants with their associated microbiomes. Tringe was also Kaze’s mentor during her 2018 …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … each variety stores sugars and sequesters carbon. 2015: Epigenetic Control of Drought Tolerance in Sorghum (EPICON) …