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Tanja Woyke Elected to American Academy of Microbiology
… JGI’s Microbial Genomics Program since 2009 and heads the Single Cells group. She has also served as the Functional Genomics … genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One …
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
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Draft genome of five Cupriavidus plantarum strains: agave, maize and sorghum plant-associated bacteria with resistance to metals
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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … with both, and generally it’s more efficient just to make a single library tape. If you do have both Illumina and …
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An Integrated Dataset to Understand Ecosystem Interaction
… were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic … National Laboratory, dating back to the first complete genome of a poplar tree in 2006. …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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You Can Move, But You Can’t Hide
… entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … The U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), and the …
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A More Intuitive Phytozome Interface
… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data …
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Tracking the Origins of Methane-Producing Microbes
… Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … these samples by sorting the microbes into small pools of cells that were then sequenced separately. From these … more with JGI Microbial Program head Tanja Woyke and her Single Cells team member Frederik Schulz to screen the …
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