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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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Size-fractionated metagenomic depth profiles from two sulfidic stations in the Chesapeake Bay.
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the … Hour mentioned that she had gained knowledge in bioinformatics and machine learning. “Also,” she added, ”I’ve … Basso, Heejung Cho Project:  Development of a computational pipeline to detect tailocin from bacterial growth Yibing …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to … fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … address some of the most pressing challenges of our time. For more information, please visit  …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video … plants, microorganisms, and environmental samples using targeted and untargeted approaches. The webinar featured  … involved? How long does it take to do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and … scientific discoveries, supporting the DOE’s Biological and Environmental Research user community in their bioenergy and …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … address some of the most pressing challenges of our time. For more information, please visit  …
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Three Join the JGI User Executive Committee
… Committee (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific Northwest … and Elizabeth “Lizzy” Wilbanks of the University of California, Santa Barbara. They join eight other JGI users … CSP and the JGI-EMSL FICUS programs and brings expertise in metagenomics and novel applications for long-read DNA …
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Diverse ecophysiological adaptations of subsurface Thaumarchaeota in floodplain sediments revealed through genome-resolved metagenomics
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Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika
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