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Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions
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Accelerating Metagenomics Discoveries with Deep Learning
… the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … such as  Mash and  BBsketch , whose lead developer is JGI software developer Brian Bushnell, no alignment-free … order to vectorize protein sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists …
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Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments  
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Trent Northen
… the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development … Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  … B.S. in …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… biological contexts. The program fosters intimate, dynamic interactions, offering an unparalleled platform for …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida … significant scientific observations for this Everglades area. Their paper is currently under peer review. Although …
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Logos and Templates
The JGI Style Guide offers tips on JGI logo usage - please follow these guidelines. Logos JGI logo – stacked JGI logo – horizontal JGI logo – indicia …
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Viruses Reprogram Cells into Different Virocells
… infections cause significant metabolic changes in marine microbes, the answer is no. They refer to the infected … and how the outcomes of these infections can affect the interactions within their ecosystems. Summary Microbes drive … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Sequencing Technologies
… sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing technologies has allowed the JGI to increase sequencing output while significantly … hand with the Project Management Office to help ensure the JGI’s genomic capabilities are ready and applicable to …
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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Synergistic interactions between anammox and dissimilatory nitrate reducing bacteria sustains reactor performance across variable nitrogen loading ratios
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Hiroshi Otani
… 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His research activity … of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … particularly interested in understanding how, when and why microbes decide to produce which metabolites. … BS, …
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