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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms … interactions. This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew … of a virus relative to its host (inferred through sequence data) can suggest different predatory behaviors. A high …
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2022 Progress Report
… home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… junk DNA, so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many more … sectors and it is still seen today as a massive feat in science and collaboration. In closing his presentation, … one second. “It isn’t just the generation of vast troves of data, it’s the new areas of scientific possibility that …
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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Crysten Blaby-Haas
… engineering. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de … (2015) where she co-founded and led the Quantitative Plant Science Initiative (2017-2022), a BER Science Focus Area … PhD, Microbiology and Cell Science, University of Florida NIH Postdoctoral Researcher, …
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Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery
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Metagenome-assembled genomes from microbial communities producing lactic acid from dairy residues
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Ian Blaby
… strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. … oxidase for biophotovoltaic energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. al., Genome‐wide … Chlamydomonas genome project: a decade on. Trends in plant science . 19: 10, 672-680. 2014 Blaby, et. al., …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on … changing planet. In this short audio production, we’ll hear from Karolina Heyduk, an evolutionary plant biologist at the …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship … I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing … researchers and help expand or develop more internship programs like the JGI Internship Program during my STEM …
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Atif Shahab
… platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project … laboratory information tracking, and enables efficient analysis and reporting of sequencing projects and their … Management Systems (LIMS), bioinformatics, and genomics data management. He has worked at several renowned …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, …
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