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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Tara Oceans Expeditions that took place between 2009 and 2013, the  Chaetoceros genus has been identified as the most … noted, are believed responsible for a fifth of the planet’s photosynthesis activities. Aside from being a key component …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship … cohort, representative mentors and alumni shared their perspectives on the program and how much it meant to be a part … and listening to the interns and learning their perspectives and views” helped her further develop management …
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Better Genome Editing for Bioenergy
… microbial factory, capable of turning abundant biomass carbohydrates — glucose and xylose — into fatty acids … genes were essential to  Y. lipolytica . They identified 1,377, or 17.5 percent, of  Y. lipolytica ’s genes to be … rife with false negatives: that time, the team only found 359 genes to be essential. The team also tested for genes …
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Rex Malmstrom
… in the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high … the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative … A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.  PNAS 116 (41), …
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Maureen Berg
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Expanding Virophage Diversity
… in common: major and minor capsid proteins (MCP and mCP, respectively), ATPase involved in DNA packaging, and PRO, a … sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new … has extended the possible virophage genome size range from 13.8-29.3 kilobases (Kb) to 10.9-42.3 Kb. Additionally, the …
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The Power of One, Amplified
… genomes (MAGs), and that dominant populations varied with respect to the amount of within species recombination, … Facility, is supported under Contract No. DE-AC02-05CH11231. This work was supported in part by a Natural Sciences … work was also sponsored by NSF grants DEB-1441717, OCE-1335810, and OIA-1826734 to RS. …
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Open Frameworks Training the Next Generation of Scientists
… in 15 individual classrooms across the country, training 316 students in fungal biology, bioinformatics, and … (Module 2), Sample Collection and Processing (Module 3), Data Analysis in KBase (Module 4), and Conclusions and … workforce development in mycology and microbiome science, respectively. These programs are resources designed to prepare …
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Supporting Global Research into Actinomycetes
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified across …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was … assembly and analysis.   To put these efforts into perspective, we caught up with JGI staff, collaborators and … have evolved to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
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