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A new-to-nature carboxylation module to improve natural and synthetic CO2 fixation
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JGI & KBase at PAG XXVII
The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San … how you can use the KBase system to accelerate your plant genomics research. Click here to download a list of talks … and KBase will be co-located at Berkeley Lab’s Integrative Genomics Building (IGB). Click here to learn more about this …
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Game On: High School Students Drive Everglades Metagenomics Study
… partnership. The class decided to do an environmental microbial community (metagenomic) soil study in an untouched … a deeper understanding of both the research process and metagenomics while legitimately contributing to the body of … This was a first of its kind project, but it is a great model of how the JGI can partner and help train the next …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea … array of microorganisms adapted to living in extreme conditions. At these vents, and underwater volcanoes,  researchers studied microbial communities across five oceanic regions. In doing …
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Axel Visel
… in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received … tolerant CAM plants, Agave deserti and Agave tequilana. BMC Genomics  14, 563. May D, Blow MJ, Kaplan T, McCulley DJ, …
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Cataloging the Microbes that Manage the Health of River Systems
… a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the … do—can help researchers develop predictive watershed scale models to manage river ecosystems. One application for the … Science Program and the University of Colorado Anschutz’s Genomics Shared Resource. The work (proposal …
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What Happens Underground Influences Global Nutrient Cycles
… projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of … Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming through the … omics and computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. …
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Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, functional annotation and methylomics) that run on microbial genomes and metagenomes. He also works on …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
DNA for genome sequencing was no easy task. The traditional way of collecting them is through a method called Multiple Displacement Amplification, and most genomes that were acquired through it were usually only around 30% complete.  Described in  ISME Communications …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across … State University campuses for biotechnology education as part of a course-based undergraduate resource …
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JGI User Executive Committee Expands
… of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … genetics expertise and experience as a primarily fungal genomics user, he aims to help align JGI policies with … her institution and Bioenergy Research Centers. Sogin is a microbial ecologist at UC Merced, where her group focuses on …
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