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Data Policy
… are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a limited and time-sensitive protection of certain types of data to support their use by those … to as “data users”) cannot see this data. Use-Restriction : A period in which data is publicly visible and …
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Waiting to Respire
… to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … fellow Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed Margulisbacteria, … The research teams opted to collaborate on a single study, with Matheus Carnevali and Schulz sharing co-first …
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Awakening the Sleeping Carboxylase Function of Enzymes: Engineering the Natural CO2‑Binding Potential of Reductases
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as … great impact on these algal blooms. So Vardi and his group study one specific alga,  Emiliania huxleyi  (sequenced by … This work paved the way to move beyond a single case-study, the reference genome, to something that represents …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by altering … List of pubs available on NCBI … Implementation of the Index of Cell Identity as an R package …
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DAP-seq Drives Robust Mapping of Gene Regulation
… assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like … hard to make them work for the kinds of plant samples we study — and even go beyond, putting four different species … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an … workshops. Of common interest is the method development to study active sites or single cells in their functional … latest advancements in imaging-related technology and instrument-analytical methods.  “The microfluidic devices we …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the … of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage …
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial … University of Delaware BA in Biology, Boston University ( magna cum laude ) …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for … describe a workforce development program for higher education that develops skills in fungal biology and genomics.  … genomes, but unfortunately there are not many available to study. This is because most fungal clades have no reference …
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Four Researchers Join JGI User Executive Committee
… of Energy user facility located at Lawrence Berkeley National Laboratory. Holly Bik of the University of Georgia, Greg Bonito of Michigan State University, Jonathan Eisen of the … data and expertise to the global research community to study complex biological and environmental systems. The …
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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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