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Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant–pathogen interactions in a tree
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Extracting Protein-Protein Interactions (PPIs) from Biomedical Literature using Attention-based Relational Context Information
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Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
JGI will advance the bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for … its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at … of Science user facility with broader national efforts to promote and stimulate a bioeconomy, where renewable, …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 … publicly available metagenome data provided by the other study co-authors, and reconstructed from these 10 … (MCR), the final step in methanogenesis, or MCR-like complexes, likely involved in short-chain alkane oxidation. …
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Graduate Students Get Thesis Research Opportunity at the JGI
… (SCGSR) program awards graduate students the opportunity to pursue part of their thesis research at one of the DOE … in wetland carbon cycling and the interactions of plants with their associated microbiomes. Tringe was also … and metabolism, work on which she will expand with her study of microbes in California’s manmade water transport …
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Though visible to the naked eye, microscopy reveals unexpected complexity … at the Université des Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing to identify … which is a process analogous to photosynthesis for plants.” Another outstanding question is whether the new …
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