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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … for “regular” vs the ultra-low input library creation protocols for PacBio? A(nswer):  Regular PacBio typically …
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Promoting the Power of Viral Metagenomics
… smaller than humans, like bacteria, this power is not surprising at all.  In fact, even in non-pandemic times such … vents – and computationally identifying which sequences represent viruses that were present in the sample. From these data it is possible to … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Styling for Safety: PPE, It’s the JGI Way
… PPE or Personal Protective Equipment is worn to minimize exposure to hazards … cause workplace injuries and illnesses.  PPE or Personal Protective Equipment is worn to minimize exposure to hazards … lab. To address this issue, we launched a PPE Campaign to provide our colleagues with a visual representation of JGI …
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JGI announces first round of 2023 New Investigator awardees
… That’s why twice each year we look for novel research projects — aligned with DOE missions and from PIs who have not led any previously-accepted proposals —  through the  New Investigator call under our … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Improving the Cacao Genome and Phytozome
… International Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The … is collaborating with others to develop healthier and more productive cacao plants and ensure there will be cocoa for … was developing a high quality node for cacao used for systemic orthology to enable use for both cacao functional …
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JGI Announces 2025 New Investigator Portfolio
… researchers) Each year, the JGI searches for novel research projects from PIs who have not led any previously accepted … DNA sequencing to explore microbial and plant interactions across unique ecosystems, from alpine soils to tropical glaciers.  Proposals …
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The fungus that made itself at home
… for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the fungus has … The brown rot Serpula lacrymans is typically found in spruce and other conifers in boreal forests. As these trees … buildings, the dry rot fungus migrated indoors and across borders, adapting to thrive in manmade environments. …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… of California, Berkeley. Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and … that could help crop breeders and researchers predict how crops and model organisms may evolve.  … “allopolyploids” arise when different ancestral species crossbreed before genome doubling. In allopolyploids, the …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few … proposal to understand terpene  synthesis and function across many plants in addition to maize, including the … National Science Foundation Plant-Biotic Interactions Program (grant no. 1758976 to E.S. and P.Z.) for …
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JGI@25: Strengthening Soybean
… of reducing the need for nitrogen fertilizer. These impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has desirable properties as a liquid transportation fuel, it simply …
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Training the Next Generation of Talent
… New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after … as a first-year graduate student in the Quantitative Systems Biology (QSB) Group under the School of Natural … as this program grows there will be a strong culture of cross-training and cross-collaboration between UC Merced and …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with excitement and determination as … and their JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and … C. Villada, Ecology & Evolution of Self-Catalytic Introns across Earth’s Microbiomes Sonia Vargas and mentors Tomas …
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