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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … releasing fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … collaboration with the JGI Algal Program, which explores genomics of algal diversity and biology to support basic … bioenergy and biomanufacturing. The JGI Algal Program makes genomes and multi-omics data from JGI CSP projects publicly …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary across … food webs in cold, but fecund polar waters. “A lot of our food comes from the North Atlantic, North Pacific and … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into many more samples and refined our methodology,” Neri said. “Our team grew and so did the …
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When “The Blob” Made It Hotter Under the Water
… climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … as part of Hallam’s approved proposal through the Community Science Program . The proposal focuses on uncovering the …
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DOE JGI Interns Share Their Summer Experiences
… DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two undergraduate students … second year of the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship Program, Susannah … summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with …
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The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis
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Learning to Look
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a … Simon Roux, a JGI research scientist in the  Environmental Genomics group . Training the Search Tool Inoviruses are … result of this hidden diversity of inoviruses now overhauls our perception of this virus group – from minor curiosities …
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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