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University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging … AT, Blaby-Haas CE. (2024) Machine learning sheds light on microbial dark proteins. Nature Rev Micro 22, 63. Davidi L, …

Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to study these complex natural systems. Microbial …

Bacterial enzymes play second fiddle to those from fungi when it comes to breaking … in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria … happening on and in forest soil also better enriches models of global carbon and nitrogen cycling, both on the …

Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on … had their own reasons for wishing to serve on the UEC. For microbial ecologist Gilbert at the University of California … review procedures and the organization of the JGI Annual Genomics of Energy & Meeting. Any investigator who has been …

In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. Maximizing soybean yield is critical to …

… (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific Northwest National … Soil Microbiome SFA. She serves as Secretary within the Microbial Ecology Section of the Ecological Society of … has served on review panels for the JGI’s Functional Genomics CSP and the JGI-EMSL FICUS programs and brings …

… issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell … sequence reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research …

Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes …

… “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of cellular complexity and microbial symbiosis. Further, the symposium showcases … advancements that facilitate the shift from uncovering microbial novelties to deciphering metabolic and functional …

As SIP experiments shed more light on microbial communities than ever before — especially with the … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like these … high-quality datasets, enabling global insights from modeling, machine learning, and subsequent experiments.  … …