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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome … specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, … doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the … binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities … of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … Biological and Environmental Research (BER) missions. The JGI provides integrated high-throughput sequencing and …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s population, the number … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing … complex polysaccharides. Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing … absorbable solution of sugars. But pollen contains plant cell walls, which have complex, branching chains of …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields ranging from …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … Jeremy Schmutz is the Plant Science Program Head at the JGI. Click to learn more about the program's areas of … BA in Biology, North Central College, Naperville, IL BS in …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple … a broader analysis than had ever been done before to look at how multiple forest fungi have independently evolved to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities
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New Insights Into the Influence of Plant and Microbial Diversity on Denitrification Rates in a Salt Marsh
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Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities
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